ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR169
source: PMRD, original name: ptc-miR169c
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAGGTTTTCCTTGGCTACA mismatches: 2 bulges: 0 |
pre-miRNA
CAAGTTTGATGCAGCCAAGGATGACTTGCCGACGACTCAATTTTTGCTTCCATATGGTAGAAGAGATGAATAGGTTGGCAGGTTTTCCTTGGCTACATTTT
CC
dot-bracket secondary structure
)......((((.(((((((((.(((((((((((.(.(((.(((((.((.((....)).))))))).))).)..))))))))))).))))))))).))))..
..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
CAAGTTTGATGCAGCCAAGGATGACTTGCCGACGACTCAATTTTTGCTTCCATATGGTAGAAGAGATGAATAGGTTGGCAGGTTTTCCTTGGCTACATTTT
CC
dot-bracket secondary structure
)......((((.(((((((((.(((((((((((.(.(((.(((((.((.((....)).))))))).))).)..))))))))))).))))))))).))))..
..
SIMILARITIES| miRBase ptc-MIR169c: 4.0E-53 PMRD ptr-miR169b: 7.0E-33 microPC miR169: 2.0E-8 | UniProt no hits RFAM 2MIR169_2: 6.0E-52 |
Identical with: ptc-MIR169c from miRBase (MNEST041357) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
