ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR169
source: PMRD, original name: ptc-miR169j
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAGC mismatches: 0 bulges: 2 |
pre-miRNA
ATCTTGTTTGATAGCCAAGGATGACTTGCCTGCTACTTGCAAGAGTTTCTGCAAAGAGATCAGAACCAAATATGCATGGAATTATATGTAATGAAACTCTT
GTTTGATTGCCAGGCAGTCTCCTTGGCTAGCCTGACA
dot-bracket secondary structure
)...((((...((((((((((.((((.((((((..(..(((((((((((......(....)...........((((((......))))))..)))))))))
))..)...).)))))))))))))))))))....))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
ATCTTGTTTGATAGCCAAGGATGACTTGCCTGCTACTTGCAAGAGTTTCTGCAAAGAGATCAGAACCAAATATGCATGGAATTATATGTAATGAAACTCTT
GTTTGATTGCCAGGCAGTCTCCTTGGCTAGCCTGACA
dot-bracket secondary structure
)...((((...((((((((((.((((.((((((..(..(((((((((((......(....)...........((((((......))))))..)))))))))
))..)...).)))))))))))))))))))....))))
SIMILARITIES| miRBase ptc-MIR169j: 6.0E-74 PMRD ptc-miR169l: 1.0E-13 microPC miR169: 0.0001 | UniProt no hits RFAM 5MIR169_5: 1.0E-72 |
Identical with: ptc-MIR169j from miRBase (MNEST041364) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
