ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR169
source: PMRD, original name: ptc-miR169l
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAAG mismatches: 0 bulges: 2 |
pre-miRNA
TCTTGTTTGATAGCCAAGGATGACTTGCCTGCTACATACAAGAGATCATTATGCATAAATAGAACGAAATATGTACATGGTATTAATTAATGCAGTGAAA
ACTCTTGTTTGGTTGCCAGGCAGTCTCCTTGGCTAAGCTGACA
dot-bracket secondary structure
...((((...((((((((((.((((.((((((..((.(((((((.......((((((............))))))(((.(((((....))))).)))...
.))))))).))...).)))))))))))))))))))....))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
TCTTGTTTGATAGCCAAGGATGACTTGCCTGCTACATACAAGAGATCATTATGCATAAATAGAACGAAATATGTACATGGTATTAATTAATGCAGTGAAA
ACTCTTGTTTGGTTGCCAGGCAGTCTCCTTGGCTAAGCTGACA
dot-bracket secondary structure
...((((...((((((((((.((((.((((((..((.(((((((.......((((((............))))))(((.(((((....))))).)))...
.))))))).))...).)))))))))))))))))))....))))
SIMILARITIES| miRBase ptc-MIR169l: 2e-77 PMRD ptc-miR169j: 0.0000000000001 microPC miR169: 0.0001 | UniProt no hits RFAM MIR169_5: 3e-76 |
Identical with: ptc-MIR169l from miRBase (MNEST041366) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
