ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR169_2
source: PMRD, original name: ptc-miR169n
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCCAAGGATGACTTGCCG miRNA* GCAAGCATCCTTGGTTCTCC mismatches: 1 bulges: 1 |
pre-miRNA
TAGAGTGGATTTGAGCCAAGGATGACTTGCCGCAGATGCATGGTCCTTGCTGCTGATCACATACCAAGGGGGGTTTTGGGTGGCAAGCATCCTTGGTTCTC
CTTCGCT
dot-bracket secondary structure
)..((((((...((((((((((((.((((((((.((.((....((((((.((.((....)))).))))))..)).))..))))))))))))))))))))..
.))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
TAGAGTGGATTTGAGCCAAGGATGACTTGCCGCAGATGCATGGTCCTTGCTGCTGATCACATACCAAGGGGGGTTTTGGGTGGCAAGCATCCTTGGTTCTC
CTTCGCT
dot-bracket secondary structure
)..((((((...((((((((((((.((((((((.((.((....((((((.((.((....)))).))))))..)).))..))))))))))))))))))))..
.))))))
SIMILARITIES| miRBase ptc-MIR169n: 4.0E-56 PMRD ptc-miRf10668-akr: 3.0E-44 microPC miR169: 2.0E-5 | UniProt no hits RFAM 2MIR169_2: 7.0E-55 |
Identical with: ptc-miRf10668-akr from PMRD (MNEST052490), ptc-MIR169n from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
