ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR169_1
source: PMRD, original name: ptc-miR169q
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGACGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAGG mismatches: 0 bulges: 2 |
pre-miRNA
ATCTTGTTAGTTAGCCAAGGACGACTTGCCTGTTCCTAGCAATTTGGGATTTGCCCTGGACTAAGAGGCAGGACCCTCATTCCGGGTTTCAGGCAGTCTCC
TTGGCTAGGTTGACA
dot-bracket secondary structure
)...(((((.(((((((((((.((((.(((((..((..(.(((..(((.((((((((......)).)))))).)))..))))..))...))))))))))))
)))))))).).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
ATCTTGTTAGTTAGCCAAGGACGACTTGCCTGTTCCTAGCAATTTGGGATTTGCCCTGGACTAAGAGGCAGGACCCTCATTCCGGGTTTCAGGCAGTCTCC
TTGGCTAGGTTGACA
dot-bracket secondary structure
)...(((((.(((((((((((.((((.(((((..((..(.(((..(((.((((((((......)).)))))).)))..))))..))...))))))))))))
)))))))).).))))
SIMILARITIES| miRBase ptc-MIR169q: 7.0E-61 PMRD sly-miR169b: 1.0E-6 microPC no hits | UniProt no hits RFAM 5MIR169_5: 1.0E-59 |
Identical with: ptc-MIR169q from miRBase (MNEST041371) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
