ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR169_2
source: PMRD, original name: ptc-miR169s
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGCCAAGGATGACTTGCCG miRNA* GCAAGCTGTCCTTGGCTACAT mismatches: 4 bulges: 0 |
pre-miRNA
AGAGTGTGATTCAGCCAAGGATGACTTGCCGGCAGCAGGTAAGAGCAAAGCTCCGTTTTTGGAAGTTCAAGGATATCTTAACTTTTCCGGCCGGCAAGCT
GTCCTTGGCTACATTGTACT
dot-bracket secondary structure
..((((..((..((((((((((..(((((((((....((.(((((..(((....((((((((....))))))))..)))..))))))).)))))))))..
))))))))))..))..))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
AGAGTGTGATTCAGCCAAGGATGACTTGCCGGCAGCAGGTAAGAGCAAAGCTCCGTTTTTGGAAGTTCAAGGATATCTTAACTTTTCCGGCCGGCAAGCT
GTCCTTGGCTACATTGTACT
dot-bracket secondary structure
..((((..((..((((((((((..(((((((((....((.(((((..(((....((((((((....))))))))..)))..))))))).)))))))))..
))))))))))..))..))))
SIMILARITIES| miRBase ptc-MIR169s: 8e-64 PMRD ptc-miRf12269-akr: 0.000000000006 microPC miR169: 0.000006 | UniProt no hits RFAM MIR169_2: 1e-62 |
Identical with: ptc-MIR169s from miRBase (MNEST041373) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
