ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR171_1
source: PMRD, original name: ptc-miR171k
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGATTGAGCCGCGCCAATATC miRNA* TACTGGCTCGGTTCAACCTCA mismatches: 3 bulges: 0 |
pre-miRNA
GATACTGGCTCGGTTCAACCTCATCGTAGTCTTGATGAATGATTCAAATCTATGGTTGGATTGAGCCGCGCCAATATC
dot-bracket secondary structure
((((.((((.((((((((.((.(((((((..((((........))))..))))))).)).)))))))).)))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GATACTGGCTCGGTTCAACCTCATCGTAGTCTTGATGAATGATTCAAATCTATGGTTGGATTGAGCCGCGCCAATATC
dot-bracket secondary structure
((((.((((.((((((((.((.(((((((..((((........))))..))))))).)).)))))))).)))).))))
SIMILARITIES| miRBase ptc-MIR171k: 5e-39 PMRD ptc-miR171j: 7e-20 microPC miR171: 0.0002 | UniProt no hits RFAM MIR171_1: 1e-37 |
Identical with: ptc-MIR171k from miRBase (MNEST041391) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
