ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR478
source: PMRD, original name: ptc-miR478f
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACATGTCTTCTATTTTTAGGGA miRNA* TCTTATTTTTAGGAGCCGATGTCATT mismatches: 5 bulges: 2 |
pre-miRNA
AAGTATCTTATTTTTAGGAGCCGATGTCATTTTTTTGACATGTCTTCTATTTTTAGGGACCGA
dot-bracket secondary structure
..((.(((((....((((((.(.((((((......))))))).))))))....)))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
AAGTATCTTATTTTTAGGAGCCGATGTCATTTTTTTGACATGTCTTCTATTTTTAGGGACCGA
dot-bracket secondary structure
..((.(((((....((((((.(.((((((......))))))).))))))....)))))))...
SIMILARITIES| miRBase ptc-MIR478f: 1e-17 PMRD ptc-miR478c: 0.00004 microPC no hits | UniProt no hits RFAM MIR478: 0.00000000001 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
