ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR478
source: PMRD, original name: ptc-miR478s
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAACGTGTCTCCTATTTTTAGGGA miRNA* TCATTTTTAGGGATAAACGTTAAT mismatches: 5 bulges: 4 |
pre-miRNA
TCTCATTTTTAGGGATAAACGTTAATGTTTTAGACGAGTCTCCTAAATTTTAGGGACTAATGTCATTTTTAACGTGTCTCCTATTTTTAGGGACC
dot-bracket secondary structure
((((.....(((((((..(((((((.......(((.((((.((((.....))))))))...)))....)))))))))).))))......))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
TCTCATTTTTAGGGATAAACGTTAATGTTTTAGACGAGTCTCCTAAATTTTAGGGACTAATGTCATTTTTAACGTGTCTCCTATTTTTAGGGACC
dot-bracket secondary structure
((((.....(((((((..(((((((.......(((.((((.((((.....))))))))...)))....)))))))))).))))......))))..
SIMILARITIES| miRBase ptc-MIR478s: 5e-49 PMRD ptc-miR478q: 1e-46 microPC no hits | UniProt no hits RFAM MIR478: 1e-28 |
Identical with: ptc-MIR478s from miRBase (MNEST041497) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
