ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR478
source: PMRD, original name: ptc-miR478u
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAACGTGTCTCCTATTTTTAGGGA miRNA* CTTTTTAGGGATAAACGTTAAT mismatches: 2 bulges: 6 |
pre-miRNA
TCTCCTTTTTAGGGATAAACGTTAATATTTTAGACGAGTCTCCTAATTTTTAGGGACTGATGTCATTTTTAACGTGTCTCCTATTTTTAGGGACC
dot-bracket secondary structure
..(((((..(((((((..(((((((.......((((((((.((((.....))))))))..))))....)))))))))).)))).....)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
TCTCCTTTTTAGGGATAAACGTTAATATTTTAGACGAGTCTCCTAATTTTTAGGGACTGATGTCATTTTTAACGTGTCTCCTATTTTTAGGGACC
dot-bracket secondary structure
..(((((..(((((((..(((((((.......((((((((.((((.....))))))))..))))....)))))))))).)))).....)))))..
SIMILARITIES| miRBase ptc-MIR478u: 5e-49 PMRD ptc-miR478o: 3e-44 microPC no hits | UniProt no hits RFAM MIR478: 8e-36 |
Identical with: ptc-MIR478u from miRBase (MNEST041498) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
