ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR171_2
source: PMRD, original name: ptc-miR479
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGATATTGGTCCGGCTCATC miRNA* TCTTCACTCATGAAGACGAGCCGAATCAATATCACTCT mismatches: 4 bulges: 0 |
pre-miRNA
GGTGTGATATTGGTCCGGCTCATCTTCTGTGCATAAGCATCTGAAGTTCTTCACTCATGAAGACGAGCCGAATCAATATCACTCT
dot-bracket secondary structure
((.(((((((((((.((((((..((((.((((....))))..)))).((((((....)))))).)))))).))))))))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
GGTGTGATATTGGTCCGGCTCATCTTCTGTGCATAAGCATCTGAAGTTCTTCACTCATGAAGACGAGCCGAATCAATATCACTCT
dot-bracket secondary structure
((.(((((((((((.((((((..((((.((((....))))..)))).((((((....)))))).)))))).))))))))))).))
SIMILARITIES| miRBase ptc-MIR479: 4e-43 PMRD ptc-miR171l: 4e-43 microPC miR171: 1e-40 | UniProt no hits RFAM MIR171_2: 7e-42 |
Identical with: ptc-MIR479 from miRBase (MNEST041499) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
