ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR480
source: PMRD, original name: ptc-miR480a
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTACTACATCATTGACGTTGAAC miRNA* TTGGGGTTGATCCTTGTTTAGTTA mismatches: 9 bulges: 2 |
pre-miRNA
TAATATGTTTGGGGTTGATCCTTGTTTAGTTATAATAGACCCACACCTGACTGCTTAGAATTATTTGTTATCGCATATCCGACTACATTATTGACGTTGA
AAAACAGAGAACTACTACATCATTGACGTTGAACCATAAA
dot-bracket secondary structure
...((((((..(.((..((...(((.(((((.((((((........((((....)))).......(((..(((......)))..)))))))))..(((..
..)))....)))))..)))..))..)).)..)).))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
TAATATGTTTGGGGTTGATCCTTGTTTAGTTATAATAGACCCACACCTGACTGCTTAGAATTATTTGTTATCGCATATCCGACTACATTATTGACGTTGA
AAAACAGAGAACTACTACATCATTGACGTTGAACCATAAA
dot-bracket secondary structure
...((((((..(.((..((...(((.(((((.((((((........((((....)))).......(((..(((......)))..)))))))))..(((..
..)))....)))))..)))..))..)).)..)).))))..
SIMILARITIES| miRBase ptc-MIR480a: 1e-75 PMRD ptc-miR480b: 6e-71 microPC no hits | UniProt no hits RFAM MIR480: 1e-69 |
Identical with: ptc-MIR480a from miRBase (MNEST041500) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
