ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR481
source: PMRD, original name: ptc-miR481a
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGACCTCACTTAACAGCTTAAGC miRNA* TTAAGTGTGTTGGGGTAGTGG mismatches: 6 bulges: 3 |
pre-miRNA
GAAGGTTAAGTGTGTTGGGGTAGTGGAGATGGTCAAAGATGTTAGAGAATAATATAAATCATATCCTAGGACCTCACTTAACAGCTTAAGCTA
dot-bracket secondary structure
..((.((((((((..((((((...(((.(((((.....((((((.....))))))..))))).)))....))))))....))).))))).)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
GAAGGTTAAGTGTGTTGGGGTAGTGGAGATGGTCAAAGATGTTAGAGAATAATATAAATCATATCCTAGGACCTCACTTAACAGCTTAAGCTA
dot-bracket secondary structure
..((.((((((((..((((((...(((.(((((.....((((((.....))))))..))))).)))....))))))....))).))))).)).
SIMILARITIES| miRBase ptc-MIR481a: 5e-46 PMRD ptc-miR481d: 2e-17 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
