ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR481
source: PMRD, original name: ptc-miR481b
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGACCTCACTTAACAGCTTAAGC miRNA* TTAAGCTATTGGGTTGAAATGATTCTTT mismatches: 2 bulges: 4 |
pre-miRNA
ATCCTAGGACCTCACTTAACAGCTTAAGCTATTGGGTTGAGATGGTTCTTTGACATGATATCAGAGCCTTGATAACCAAGTGGTCTCGAGTTTGAATCTC
ATCATCCTCATTTATTTGATAAAAAATACTTAAAGGGGTGTGTTAGAGAATAATATAAATCATATTCTGGAACCTCACCTAACAGCTTAAGCTATTGGGT
TGAAATGATTCTTTGACATT
dot-bracket secondary structure
.((..((((.(((((((((.((((((((((.((((((.((...((((((..((.(((((...(((.(((((.....)))).).))).(((..(((.....
.)))..)))..((((((..(((...((((((....)))))).)))..)))))).....))))).))..)))))))))))))).)))))))))).))))).
)))...).))))..))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
ATCCTAGGACCTCACTTAACAGCTTAAGCTATTGGGTTGAGATGGTTCTTTGACATGATATCAGAGCCTTGATAACCAAGTGGTCTCGAGTTTGAATCTC
ATCATCCTCATTTATTTGATAAAAAATACTTAAAGGGGTGTGTTAGAGAATAATATAAATCATATTCTGGAACCTCACCTAACAGCTTAAGCTATTGGGT
TGAAATGATTCTTTGACATT
dot-bracket secondary structure
.((..((((.(((((((((.((((((((((.((((((.((...((((((..((.(((((...(((.(((((.....)))).).))).(((..(((.....
.)))..)))..((((((..(((...((((((....)))))).)))..)))))).....))))).))..)))))))))))))).)))))))))).))))).
)))...).))))..))....
SIMILARITIES| miRBase ptc-MIR481b: 3e-123 PMRD ptc-miR481c: 2e-44 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-MIR481b from miRBase (MNEST041503) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
