ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR481
source: PMRD, original name: ptc-miR481e
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGACCTCACCTAACAGCTTAAGC miRNA* TTTCACTTGAGGGGGTGTATTAG mismatches: 6 bulges: 3 |
pre-miRNA
ATCCTAGGACCTCACCTAACAGCTTAAGCTATTGGGTTGAGATGATTCTTTGACATGGTATCAGAGCCTTGATGACCAAGTGGTCACGAGTTCGAATCTC
ACCACTCCTATTTATTTGATAAAAATCAAGCACAAGGTAATGTGGGCCTATGCAAGTTTCAAGCCCAAAGAGCTTTCACTTGAGGGGGTGTATTAG
dot-bracket secondary structure
...((((.(((((.(((...((...(((((.((((((((((((......(((.(((((.....((((.(((.(((((....)))))))))))).......
.((((.(((.....((((((....))))))....)))....))))..))))))))))))).)))))))..)))))...))..)))))).)).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
ATCCTAGGACCTCACCTAACAGCTTAAGCTATTGGGTTGAGATGATTCTTTGACATGGTATCAGAGCCTTGATGACCAAGTGGTCACGAGTTCGAATCTC
ACCACTCCTATTTATTTGATAAAAATCAAGCACAAGGTAATGTGGGCCTATGCAAGTTTCAAGCCCAAAGAGCTTTCACTTGAGGGGGTGTATTAG
dot-bracket secondary structure
...((((.(((((.(((...((...(((((.((((((((((((......(((.(((((.....((((.(((.(((((....)))))))))))).......
.((((.(((.....((((((....))))))....)))....))))..))))))))))))).)))))))..)))))...))..)))))).)).))))
SIMILARITIES| miRBase ptc-MIR481e: 6e-109 PMRD ptc-miR481c: 4e-73 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-MIR481e from miRBase (MNEST041506) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
