ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR530
source: PMRD, original name: ptc-miR530a
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCATTTGCACCTGCACCTT miRNA* GGTGCAGGTGCAGGTGCAGG mismatches: 0 bulges: 0 |
pre-miRNA
GCCAACATGTTGCCTTTATCTGCATTTGCACCTGCACCTTACTTGTTTCTTTCTTTTGTTTTTGACTCCAAAACCAAAAGTAAGTTTGAAACATTAAAAC
AAGCTTGAGGTGCAGGTGCAGGTGCAGGTGAATGCCATGTTGGT
dot-bracket secondary structure
(((((((((..((.(((((((((((((((((((((((((((((((((((((.((((((.(((((....))))).)))))).)))............))))
)))..))))))))))))))))))))))))))).)))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
GCCAACATGTTGCCTTTATCTGCATTTGCACCTGCACCTTACTTGTTTCTTTCTTTTGTTTTTGACTCCAAAACCAAAAGTAAGTTTGAAACATTAAAAC
AAGCTTGAGGTGCAGGTGCAGGTGCAGGTGAATGCCATGTTGGT
dot-bracket secondary structure
(((((((((..((.(((((((((((((((((((((((((((((((((((((.((((((.(((((....))))).)))))).)))............))))
)))..))))))))))))))))))))))))))).)))))))))))
SIMILARITIES| miRBase ptc-MIR530a: 4e-78 PMRD ptc-miRf11025-akr: 2e-74 microPC miR1030: 3e-57 | UniProt no hits RFAM MIR530: 8e-77 |
Identical with: ptc-miRf10082-akr from PMRD (MNEST051904) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
