ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR530
source: PMRD, original name: ptc-miR530b
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCATTTGCACCTGCATCTT miRNA* GGTGCAGGTGCAAGTGCAGG mismatches: 0 bulges: 0 |
pre-miRNA
GCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTTTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTG
GGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGT
dot-bracket secondary structure
(((((.(((..((.((((((((((((((((((((((((((..((....(((((((((.((....)).))))))))).(((((.((((..(((.....)))
.)))).........(....).....))))).)).)))))))))))))))))))))))))).))))).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
GCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTTTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTG
GGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGT
dot-bracket secondary structure
(((((.(((..((.((((((((((((((((((((((((((..((....(((((((((.((....)).))))))))).(((((.((((..(((.....)))
.)))).........(....).....))))).)).)))))))))))))))))))))))))).))))).)))))
SIMILARITIES| miRBase ptc-MIR530b: 1e-94 PMRD ptc-miRf11519-akr: 9e-83 microPC miR530: 2e-53 | UniProt no hits RFAM MIR530: 2e-93 |
Identical with: ptc-MIR530b from miRBase (MNEST041510) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
