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ABOUT THIS RECORD
ID:
MNEST051808
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miR827
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTAGATGACCATCAACGAAAA
miRNA*
TTTGTTGATAGTCATCTAGTG
mismatches:
2
bulges:
0
View larger
pre-miRNA
CATGAATATA
TTTGTTGATAGTCATCTAGTG
AACATTGAAAGTCATA
TTAGATGACCATCAACGAAAA
CATTCATG
dot-bracket secondary structure
(((((((.(.
(((((((((.(((((((((((
.((.......))..))
))))))))).))))))))).)
.)))))))
SIMILARITIES
miRBase
ptc-MIR827
:
8e-38
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-MIR827
from miRBase (
MNEST041511
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Lu S, Sun YH, Chiang VL,
Plant J. 55:131-151(2008).
,
"Stress-responsive microRNAs in Populus"