ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR1444
source: PMRD, original name: ptc-miR1444a
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCACATTCGGTCAATGTTC miRNA* ATGTTGACCGAATATGGATG mismatches: 1 bulges: 0 |
pre-miRNA
GTTTATCACTTGAATGTTGACCGAATATGGATGAAAAGTTGTTTTCTGTTTCCTTTCCTCCACATTCGGTCAATGTTCCAGTGATGAGC
dot-bracket secondary structure
((((((((((.(((((((((((((((.((((.((((.(..(........)..))))).)))).))))))))))))))).))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
GTTTATCACTTGAATGTTGACCGAATATGGATGAAAAGTTGTTTTCTGTTTCCTTTCCTCCACATTCGGTCAATGTTCCAGTGATGAGC
dot-bracket secondary structure
((((((((((.(((((((((((((((.((((.((((.(..(........)..))))).)))).))))))))))))))).))))))))))
SIMILARITIES| miRBase ptc-MIR1444a: 2e-45 PMRD ptc-miRf10525-akr: 2e-45 microPC miR1444: 6e-30 | UniProt no hits RFAM MIR1444: 5e-43 |
Identical with: ptc-miRf10526-akr from PMRD (MNEST052348) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
