ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR1444
source: PMRD, original name: ptc-miR1444b
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCACATTCGGTCAACGTTC miRNA* ATATTGATCGAATATGTATG mismatches: 4 bulges: 0 |
pre-miRNA
TTTATCCCTCGAATATTGATCGAATATGTATGAAATATGATGGTTATATGTTTCATTCACATTCGGTCAACGTTCGAGTGATAAA
dot-bracket secondary structure
.(((((.((((((..((((((((((.((.((((((((((.......)))))))))).)).))))))))))..)))))).))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
TTTATCCCTCGAATATTGATCGAATATGTATGAAATATGATGGTTATATGTTTCATTCACATTCGGTCAACGTTCGAGTGATAAA
dot-bracket secondary structure
.(((((.((((((..((((((((((.((.((((((((((.......)))))))))).)).))))))))))..)))))).))))).
SIMILARITIES| miRBase ptc-MIR1444b: 4e-43 PMRD ptc-miR1444c: 1e-40 microPC miR1444: 3e-31 | UniProt no hits RFAM MIR1444: 7e-42 |
Identical with: miR1444 from microPC (MNEST046835) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
