miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST051811
species:
Populus trichocarpa
miRNA family:
MIR1444
source:
PMRD, original name:
ptc-miR1444c
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCACATTCGGTCAACGTTC
miRNA*
ATATTGATCGAATATGTATG
mismatches:
4
bulges:
0
View larger
pre-miRNA
TTTATCCCTCGA
ATATTGATCGAATATGTATG
AAATATGATGGTTAAATGTTTCA
TTCACATTCGGTCAACGTTC
GAGTGATAAA
dot-bracket secondary structure
.(((((.(((((
(..((((((((((.((.(((
((((((.........))))))))
).)).))))))))))..)))
))).))))).
SIMILARITIES
miRBase
ptc-MIR1444c
:
4e-43
PMRD
ptc-miR1444b
:
1e-40
microPC
miR1444
:
8e-29
UniProt
no hits
RFAM
MIR1444: 2e-39
Identical with:
ptc-MIR1444c
from miRBase (
MNEST041514
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Lu S, Sun YH, Chiang VL,
Plant J. 55:131-151(2008).
,
"Stress-responsive microRNAs in Populus"