ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miR1445
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTTGTAGACTAGAAAAA miRNA* TCCCTAGTTTATAAGTTGTT mismatches: 4 bulges: 0 |
pre-miRNA
AAGCTAATTAATCTGATTTCCCTAGTTTATAAGTTGTTACAATTGAATGAACCTTGTTTGCAAGCATAGGATTAGTTGCCGCCCACCATAAATCCCTTGT
AGACTAGAAAAATCTAATCTGATTTGGTTT
dot-bracket secondary structure
((((((((((((..(((((..((((((((((((..(((..............((((....))))....((........))..........)))..)))))
)))))))..)))))..)).))).)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
AAGCTAATTAATCTGATTTCCCTAGTTTATAAGTTGTTACAATTGAATGAACCTTGTTTGCAAGCATAGGATTAGTTGCCGCCCACCATAAATCCCTTGT
AGACTAGAAAAATCTAATCTGATTTGGTTT
dot-bracket secondary structure
((((((((((((..(((((..((((((((((((..(((..............((((....))))....((........))..........)))..)))))
)))))))..)))))..)).))).)))))))
SIMILARITIES| miRBase ptc-MIR1445: 9e-70 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-MIR1445 from miRBase (MNEST041515) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
