ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR1446
source: PMRD, original name: ptc-miR1446a
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTGAACTCTCTCCCTCAA miRNA* GAGGTGAGGGGTTCAGAACA mismatches: 0 bulges: 2 |
pre-miRNA
CCAACTTCTTCTGAACTCTCTCCCTCAACCGCTACTCTAGAGCTTGGCAATCCTTGTCGATTGTTTCTGTGTAGCGGTTGAGGTGAGGGGTTCAGAACAT
GTTGG
dot-bracket secondary structure
(((((...((((((((((.((((((((((((((((.(..((((((((((.....))))))..))))..).))))))))))))).)))))))))))))...
)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
CCAACTTCTTCTGAACTCTCTCCCTCAACCGCTACTCTAGAGCTTGGCAATCCTTGTCGATTGTTTCTGTGTAGCGGTTGAGGTGAGGGGTTCAGAACAT
GTTGG
dot-bracket secondary structure
(((((...((((((((((.((((((((((((((((.(..((((((((((.....))))))..))))..).))))))))))))).)))))))))))))...
)))))
SIMILARITIES| miRBase ptc-MIR1446a: 6e-55 PMRD ptc-miRf12082-akr: 6e-55 microPC no hits | UniProt no hits RFAM MIR1446: 1e-53 |
Identical with: ptc-miRf12082-akr from PMRD (MNEST053904) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
