ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR1446
source: PMRD, original name: ptc-miR1446b
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTGAACTCTCTCCCTCAA miRNA* GAGGTGAGGGGTTCAGAACA mismatches: 1 bulges: 2 |
pre-miRNA
CCAATTTCTTCTGAACTCTCTCCCTCAACCGCCACTCTAGAGGTTGGCACCTTGTCAATTGTTTCTGTGTAGCGGTCGAGGTGAGGGGTTCAGAACATGT
TGG
dot-bracket secondary structure
(((((...((((((((((.(((((((.(((((.((.(.((((((((((.....))))))...))))).)).))))).)))).)))))))))))))...))
)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
CCAATTTCTTCTGAACTCTCTCCCTCAACCGCCACTCTAGAGGTTGGCACCTTGTCAATTGTTTCTGTGTAGCGGTCGAGGTGAGGGGTTCAGAACATGT
TGG
dot-bracket secondary structure
(((((...((((((((((.(((((((.(((((.((.(.((((((((((.....))))))...))))).)).))))).)))).)))))))))))))...))
)))
SIMILARITIES| miRBase ptc-MIR1446b: 9e-54 PMRD ptc-miRf12081-akr: 9e-54 microPC no hits | UniProt no hits RFAM MIR1446: 3e-35 |
Identical with: ptc-miRf12081-akr from PMRD (MNEST053903) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
