ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR1447
source: PMRD, original name: ptc-miR1447
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAATTGCAGTGCCTTGATT miRNA* TCAGGGCACTGCAATTCTAAA mismatches: 1 bulges: 0 |
pre-miRNA
GAGGCCCTAATCAGGGCACTGCAATTCTAAATGTCTGTTGGCAAGTGGCGATGCCAGACGTTTGAAATTTACTTATCATTTATTAGTCAGAATTGCAGTG
CCTTGATTTGGGCTTT
dot-bracket secondary structure
(((((((.((((((((((((((((((((((((((((...((((........)))))))))))).......(((...........))).))))))))))))
)))))))).)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
GAGGCCCTAATCAGGGCACTGCAATTCTAAATGTCTGTTGGCAAGTGGCGATGCCAGACGTTTGAAATTTACTTATCATTTATTAGTCAGAATTGCAGTG
CCTTGATTTGGGCTTT
dot-bracket secondary structure
(((((((.((((((((((((((((((((((((((((...((((........)))))))))))).......(((...........))).))))))))))))
)))))))).)))))))
SIMILARITIES| miRBase ptc-MIR1447: 2e-61 PMRD ptc-miRf11238-akr: 2e-61 microPC miR1447: 2e-45 | UniProt no hits RFAM no hits |
Identical with: ptc-MIR1447 from miRBase (MNEST041521) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
