ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR1448
source: PMRD, original name: ptc-miR1448
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTCCAACGCCTCCCATAC miRNA* ATGGGAGGATTGGACAGTA mismatches: 2 bulges: 1 |
pre-miRNA
GTTACGGGTATGGGAGGATTGGACAGTACTGCTTGGTTTTAATTAACCAAAGTCTGTTCTTTCCAACGCCTCCCATACCGGTAAT
dot-bracket secondary structure
(((((.(((((((((((.(((((.((.((.((((((((......)))).))))..)).)).)))))..))))))))))).)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
GTTACGGGTATGGGAGGATTGGACAGTACTGCTTGGTTTTAATTAACCAAAGTCTGTTCTTTCCAACGCCTCCCATACCGGTAAT
dot-bracket secondary structure
(((((.(((((((((((.(((((.((.((.((((((((......)))).))))..)).)).)))))..))))))))))).)))))
SIMILARITIES| miRBase ptc-MIR1448: 4e-43 PMRD no hits microPC miR1448: 2e-32 | UniProt no hits RFAM no hits |
Identical with: ptc-MIR1448 from miRBase (MNEST041522) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
