ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miR1449
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTGCACGTAAGATAACTC miRNA* GTAAATAGTGCTTGCATTAAT mismatches: 4 bulges: 3 |
pre-miRNA
GATTAGTTGAGGTGCACGTAAGATAACTCGATGTTAATTTAAAAAAACAAACAGGATCTCAATAAAATAAATTTAAAAAATACAGAAGGGTAAATAGTGC
TTGCATTAATTAATC
dot-bracket secondary structure
(((((((((..(((((.(((..((.((((..(((...((((((...........(....)...........))))))....)))...))))..))..)))
.))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
GATTAGTTGAGGTGCACGTAAGATAACTCGATGTTAATTTAAAAAAACAAACAGGATCTCAATAAAATAAATTTAAAAAATACAGAAGGGTAAATAGTGC
TTGCATTAATTAATC
dot-bracket secondary structure
(((((((((..(((((.(((..((.((((..(((...((((((...........(....)...........))))))....)))...))))..))..)))
.))))))))))))))
SIMILARITIES| miRBase ptc-MIR1449: 4e-16 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
