ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10009-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAACCGGTTTCGGTTCGG miRNA* GAGCCAAACCGGTTTGAAC mismatches: 2 bulges: 1 |
pre-miRNA
CTGAAAAAACCGAGCCAAACCGGTTTGAACCTGTTTTGTCCTAAAAAACCGAACCGAACTGAAACCGGTTGGTTTGAACCGGTTTCGGTTCGGTTTCAG
dot-bracket secondary structure
(((((...(((((((((((((((((..((((.(((((.......)))))..(((((.........)))))))))..))))))))).)))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CTGAAAAAACCGAGCCAAACCGGTTTGAACCTGTTTTGTCCTAAAAAACCGAACCGAACTGAAACCGGTTGGTTTGAACCGGTTTCGGTTCGGTTTCAG
dot-bracket secondary structure
(((((...(((((((((((((((((..((((.(((((.......)))))..(((((.........)))))))))..))))))))).)))))))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10803-akr: 6e-30 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
