ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10020-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGTCTGACACGCATGCCAGAC miRNA* TTGGCATCTATATTAGACTCAA mismatches: 5 bulges: 0 |
pre-miRNA
AATGTATGGGTTTGGCATCTATATTAGACTCAATACAGTTGGACTTGGCAATGCACCAAGTCCAAGGTTGCGTGGGTCTGACACGCATGCCAGACCCAAT
ACGTT
dot-bracket secondary structure
((((((((((((((((((.....(((((((((..((..((((((((((.......)))))))))).))....))))))))).....))))))))))).))
)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
AATGTATGGGTTTGGCATCTATATTAGACTCAATACAGTTGGACTTGGCAATGCACCAAGTCCAAGGTTGCGTGGGTCTGACACGCATGCCAGACCCAAT
ACGTT
dot-bracket secondary structure
((((((((((((((((((.....(((((((((..((..((((((((((.......)))))))))).))....))))))))).....))))))))))).))
)))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10021-akr: 6e-55 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10021-akr from PMRD (MNEST051843) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
