miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST051843
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10021-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CACGCATGCCAGACCCAATAC
miRNA*
ATGGGTTTGGCATCTATATT
mismatches:
5
bulges:
1
View larger
pre-miRNA
TGTAAATGT
ATGGGTTTGGCATCTATATT
AGACTCAATACAGTTGGACTTGGCAATGCACCAAGTCCAAGGTTGCGTGGGTCTGA
CACGCATGCCAGACC
CAATAC
GTTTGGA
dot-bracket secondary structure
..(((((((
(((((((((((((.....((
(((((((..((..((((((((((.......)))))))))).))....)))))))))
.....))))))))))
).))))
)))))..
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10020-akr
:
6e-55
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miRf10020-akr
from PMRD (
MNEST051842
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record