ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10029-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTCGGTTTGAACCGGTTTCGGTTC miRNA* GCCAAACCAGTTTGAACCGGTTTT mismatches: 5 bulges: 1 |
pre-miRNA
AAACCGAGCCAAACCAGTTTGAACCGGTTTTTGTCCTAAAAAACGAAACGGTCGGTTTGAACCGGTTTCGGTTCGGTTT
dot-bracket secondary structure
(((((((((((((((.(((..((((((.((((((........))))))...))))))..))).))))).))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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AAACCGAGCCAAACCAGTTTGAACCGGTTTTTGTCCTAAAAAACGAAACGGTCGGTTTGAACCGGTTTCGGTTCGGTTT
dot-bracket secondary structure
(((((((((((((((.(((..((((((.((((((........))))))...))))))..))).))))).))))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11832-akr: 1e-39 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf11832-akr from PMRD (MNEST053654) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
