ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10034-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATTTCGGACCAGGCTTCATTCC miRNA* ATTGCTGTCTGGTTCGATGTCAT mismatches: 4 bulges: 0 |
pre-miRNA
GTTGAGGGGATTGCTGTCTGGTTCGATGTCATTCATGTGAAGCTTTAACATTAATGTAGTATTGAGTGATTTCGGACCAGGCTTCATTCCCCCCAAC
dot-bracket secondary structure
((((.(((((.((..(((((((((((.((((((((.(((..((.(((....))).))..))))))))))).)))))))))))..)).))))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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GTTGAGGGGATTGCTGTCTGGTTCGATGTCATTCATGTGAAGCTTTAACATTAATGTAGTATTGAGTGATTTCGGACCAGGCTTCATTCCCCCCAAC
dot-bracket secondary structure
((((.(((((.((..(((((((((((.((((((((.(((..((.(((....))).))..))))))))))).)))))))))))..)).))))).))))
SIMILARITIES| miRBase ptc-MIR166b: 3e-50 PMRD ptc-miR166b: 3e-50 microPC miR166: 0.000005 | UniProt no hits RFAM mir-166: 6e-49 |
Identical with: ptc-MIR166b from miRBase (MNEST041323) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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