ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10040-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACGTGCCCTGCTTCTCCAGCAA miRNA* GTTGGAGAAGAAGAGCGCGTGCAAA mismatches: 3 bulges: 0 |
pre-miRNA
GAGCCCGTGTTGGAGAAGAAGAGCGCGTGCAAAGTGTAAGCACTTCATCAGGATTTTGCACGTGCCCTGCTTCTCCAGCAAGGAACCGCTC
dot-bracket secondary structure
((((((.(((((((((((.((.(((((((((((((.(.............).))))))))))))).)).))))))))))).))....))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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GAGCCCGTGTTGGAGAAGAAGAGCGCGTGCAAAGTGTAAGCACTTCATCAGGATTTTGCACGTGCCCTGCTTCTCCAGCAAGGAACCGCTC
dot-bracket secondary structure
((((((.(((((((((((.((.(((((((((((((.(.............).))))))))))))).)).))))))))))).))....))))
SIMILARITIES| miRBase ptc-MIR164a: 4e-43 PMRD ptc-miR164a: 4e-43 microPC miR164: 0.00002 | UniProt no hits RFAM MIR164: 4e-34 |
Identical with: ptc-miR164a from PMRD (MNEST051619) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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