ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10044-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACCGACGGAATAATTCCGTCGGTG miRNA* CTGACGAGATTATTCCGTCGGTGAT mismatches: 2 bulges: 0 |
pre-miRNA
GCTTTAATACACTGACGAGATTATTCCGTCGGTGATTTGTAGTGGCATTTATTGTAATTTTATTCCAACCCTCTATAAAATACCGACGGAATAATTCCGT
CGGTGATGTAACAGT
dot-bracket secondary structure
((((((...((((((((..(((((((((((((((.(((((((.((.......((......)).......)).))))))).)))))))))))))))..)))
)))))...))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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GCTTTAATACACTGACGAGATTATTCCGTCGGTGATTTGTAGTGGCATTTATTGTAATTTTATTCCAACCCTCTATAAAATACCGACGGAATAATTCCGT
CGGTGATGTAACAGT
dot-bracket secondary structure
((((((...((((((((..(((((((((((((((.(((((((.((.......((......)).......)).))))))).)))))))))))))))..)))
)))))...))).)))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11857-akr: 2e-49 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf11857-akr from PMRD (MNEST053679) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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