ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10048-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCACTCTTACAGTGCCCATTGAT miRNA* CAATGGCCATTGTAAGAGTAGAAGGA mismatches: 1 bulges: 1 |
pre-miRNA
CATCTTGATCAATGGCCATTGTAAGAGTAGAAGGATCCATGAAGCAATAACTCTCTTTGCTAAAATGTGTGATAAAACATTGACTCCTGGTATTTCACTC
TTACAGTGCCCATTGATTAAGATG
dot-bracket secondary structure
(((((((((((((((.((((((((((((.((((...(((.(((((((.........)))))..(((((........)))))...)).)))..))))))))
)))))))).)))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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CATCTTGATCAATGGCCATTGTAAGAGTAGAAGGATCCATGAAGCAATAACTCTCTTTGCTAAAATGTGTGATAAAACATTGACTCCTGGTATTTCACTC
TTACAGTGCCCATTGATTAAGATG
dot-bracket secondary structure
(((((((((((((((.((((((((((((.((((...(((.(((((((.........)))))..(((((........)))))...)).)))..))))))))
)))))))).)))))))))))))))
SIMILARITIES| miRBase ptc-MIR475a: 3e-66 PMRD ptc-miRf10947-akr: 3e-66 microPC miR475: 1e-62 | UniProt no hits RFAM MIR475: 4e-38 |
Identical with: miR475 from microPC (MNEST045347) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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