ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10050-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCCATTGATTAAGATGGTA miRNA* ACATCTTGATCAATGGCCAT mismatches: 2 bulges: 0 |
pre-miRNA
GTTATAACATCTTGATCAATGGCCATTGTAAGAGTAGAAGGATCCATGAAGCAATAACTCTCTTTGCTAAAATGTGTGATAAAACATTGACTCCTGGTAT
TTCACTCTTACAGTGCCCATTGATTAAGATGGTATAAT
dot-bracket secondary structure
((((((.(((((((((((((((.((((((((((((.((((...(((.(((((((.........)))))..(((((........)))))...)).)))..)
))))))))))))))).))))))))))))))).))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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GTTATAACATCTTGATCAATGGCCATTGTAAGAGTAGAAGGATCCATGAAGCAATAACTCTCTTTGCTAAAATGTGTGATAAAACATTGACTCCTGGTAT
TTCACTCTTACAGTGCCCATTGATTAAGATGGTATAAT
dot-bracket secondary structure
((((((.(((((((((((((((.((((((((((((.((((...(((.(((((((.........)))))..(((((........)))))...)).)))..)
))))))))))))))).))))))))))))))).))))))
SIMILARITIES| miRBase ptc-MIR475a: 4e-66 PMRD ptc-miRf10049-akr: 2e-74 microPC miR475: 1e-62 | UniProt no hits RFAM MIR475: 5e-38 |
Identical with: miR475 from microPC (MNEST045347) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
