ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10154-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAACCCAAGCGTCTTGGGTC miRNA* CCGAGACGCTTGGGTCTGGTATG mismatches: 1 bulges: 1 |
pre-miRNA
TGCCAGACCGAGACGCTTGGGTCTGGTATGTTTGTCAAACCCAAGTATCTAGCGTATGGCATGGCTCAAGTGCCTTGGGTGTAGCAGCCATGCCAAACCC
AAGCGTCTTGGGTCTGGTA
dot-bracket secondary structure
((((((((((((((((((((((.(((((((.((((...(((((........((.....))..(((......))).)))))...)))).))))))).))))
))))))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
TGCCAGACCGAGACGCTTGGGTCTGGTATGTTTGTCAAACCCAAGTATCTAGCGTATGGCATGGCTCAAGTGCCTTGGGTGTAGCAGCCATGCCAAACCC
AAGCGTCTTGGGTCTGGTA
dot-bracket secondary structure
((((((((((((((((((((((.(((((((.((((...(((((........((.....))..(((......))).)))))...)))).))))))).))))
))))))))).)))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11889-akr: 0.0000004 microPC no hits | UniProt no hits RFAM MIR474: 0.0004 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
