ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10155-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCTTGGAAAGTGAATTCC miRNA* AAAACACTTTCCTGGAAACC mismatches: 3 bulges: 0 |
pre-miRNA
TTTTCAGGAAAACACTTTCCTGGAAACCAAGCCAAATTTTTCTTTGACTGGAAAGTGTTTTCCGTTGACCAACTTTTCTAATGGCAAACAAACACAGGAA
AGTTTGGAAAGTGGTTTCTTGGAAAGTGAATTCCCGAAAA
dot-bracket secondary structure
.((((.((((..((((((((.((((((((..((((((((((((.((.((....))(((((.(((((((........)).))))).)))))..)).)))))
)))))))....)))))))).))))))))..)))).)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TTTTCAGGAAAACACTTTCCTGGAAACCAAGCCAAATTTTTCTTTGACTGGAAAGTGTTTTCCGTTGACCAACTTTTCTAATGGCAAACAAACACAGGAA
AGTTTGGAAAGTGGTTTCTTGGAAAGTGAATTCCCGAAAA
dot-bracket secondary structure
.((((.((((..((((((((.((((((((..((((((((((((.((.((....))(((((.(((((((........)).))))).)))))..)).)))))
)))))))....)))))))).))))))))..)))).)))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf12049-akr: 3e-60 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
