miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST052001
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10179-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGTACCACCACTCCATCATC

miRNA*
 TGGTGGGGGTGGAGGGTACACT

mismatches: 2
bulges: 2
View larger
pre-miRNA
 GGTGGAGGTGGTGGGGGTGGAGGGTACACTGTTGGAGCTGACATTCTCTCCTCAGCAGATTGGTACCACCACTCCATCATCTGTGTC

dot-bracket secondary structure
(..(.(((((((((((.(((..(((((.((((((.((..((.....))..))))))))....))))).)))))))))))))).)..)


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q9M841|PEX12_ARATH: 0.0001

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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