ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10180-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGAAAGTTTGGAAAGTGGTTTCCC miRNA* GAAACCAAACCAAATTTTTCTTT mismatches: 3 bulges: 2 |
pre-miRNA
CACTTTCCTGGAAACCAAACCAAATTTTTCTTTGACTAGAAAGTGTTTCTGTTGACCAGCTTTCCTAATGGCAAACAAACATAGGAAAGTTTGGAAAGTG
GTTTCCCGGAAAGTG
dot-bracket secondary structure
((((((((.((((((((..((((((((((((.((....((((((...((....))...))))))....((.....))..)).))))))))))))....))
)))))).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CACTTTCCTGGAAACCAAACCAAATTTTTCTTTGACTAGAAAGTGTTTCTGTTGACCAGCTTTCCTAATGGCAAACAAACATAGGAAAGTTTGGAAAGTG
GTTTCCCGGAAAGTG
dot-bracket secondary structure
((((((((.((((((((..((((((((((((.((....((((((...((....))...))))))....((.....))..)).))))))))))))....))
)))))).))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10296-akr: 1e-37 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
