ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10181-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTTGGCAGGTTGTTCTTGGCT miRNA* CCAAGGATGACTTGCCGACGAC mismatches: 2 bulges: 0 |
pre-miRNA
AGATTGATGCAGCCAAGGATGACTTGCCGACGACTCGTTTTTGCTTTCATCAATATACGCATAATTAAGAAGAGATGAATCCGTTGGCAGGTTGTTCTTG
GCTACATTTTTCT
dot-bracket secondary structure
(((..((((.(((((((((..(((((((((((..((((((((.(((....................))).))))))))...)))))))))))..))))))
))).))))..)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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AGATTGATGCAGCCAAGGATGACTTGCCGACGACTCGTTTTTGCTTTCATCAATATACGCATAATTAAGAAGAGATGAATCCGTTGGCAGGTTGTTCTTG
GCTACATTTTTCT
dot-bracket secondary structure
(((..((((.(((((((((..(((((((((((..((((((((.(((....................))).))))))))...)))))))))))..))))))
))).))))..)))
SIMILARITIES| miRBase ptc-MIR169b: 4e-59 PMRD ptc-miR169b: 4e-59 microPC miR169: 5e-31 | UniProt no hits RFAM MIR169_2: 2e-58 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
