ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10190-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGACCCAAGAGAATTGGGTCC miRNA* ACCCAATTCTCTTGGGTCCTCT mismatches: 3 bulges: 0 |
pre-miRNA
CTGAACCCAATTCTCTTGGGTCCTCTGCAGGACCCATTAGCCTTGGGCCCTGATGGGAGACCCAAGAGAATTGGGTCCGG
dot-bracket secondary structure
(((.((((((((((((((((((..(((((((.((((.......)))).)))).)))..)))))))))))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
CTGAACCCAATTCTCTTGGGTCCTCTGCAGGACCCATTAGCCTTGGGCCCTGATGGGAGACCCAAGAGAATTGGGTCCGG
dot-bracket secondary structure
(((.((((((((((((((((((..(((((((.((((.......)))).)))).)))..)))))))))))))))))).)))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11474-akr: 0.00000000006 microPC no hits | UniProt no hits RFAM MIR474: 0.0003 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
