ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10192-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGAG mismatches: 4 bulges: 0 |
pre-miRNA
TTGAGGGGAATGTTGTCTGGCTCGAGGACTTTTTGTTCATCAATCTAATCGAACTTTCTACCTGTAGATCTAGTATCTTATTTAAGATTGATCACGTATT
AGGGTTGTCGGACCAGGCTTCATTCCCCCCAA
dot-bracket secondary structure
.((.((((((((..((((((..(((.((((((.(((..((((((((((..(((((.((((....))))...))).))....)).)))))))).)))....
)))))).)))..))))))..)))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TTGAGGGGAATGTTGTCTGGCTCGAGGACTTTTTGTTCATCAATCTAATCGAACTTTCTACCTGTAGATCTAGTATCTTATTTAAGATTGATCACGTATT
AGGGTTGTCGGACCAGGCTTCATTCCCCCCAA
dot-bracket secondary structure
.((.((((((((..((((((..(((.((((((.(((..((((((((((..(((((.((((....))))...))).))....)).)))))))).)))....
)))))).)))..))))))..)))))))).)).
SIMILARITIES| miRBase ptc-MIR166k: 6e-71 PMRD ptc-miR166k: 6e-71 microPC miR166: 0.0000004 | UniProt no hits RFAM mir-166: 1e-69 |
Identical with: ptc-MIR166j from miRBase (MNEST041331) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
