ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10199-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCGGCAGCAGCACAGTTTTGCTGC miRNA* AGCAACATAGTTTTTGGCTGCTGATTT mismatches: 5 bulges: 2 |
pre-miRNA
GAATCGGCAGCAACATAGTTTTTGGCTGCTGATTTCTGAATCGACAACGACAAAGTTCTTCATTGCTGATTTCTGAATCGGCGGTGTCACAGTTTTTGAC
TATCGATTTATGAATCGGCAGCAGCACAGTTTTGCTGCCGATTT
dot-bracket secondary structure
(((((((((((((.((.((.....(((((((((((.((((((((......(((((.....(((((((((((....))))))))))).......)))))..
..)))))))).)))))))))))...)).)).)))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GAATCGGCAGCAACATAGTTTTTGGCTGCTGATTTCTGAATCGACAACGACAAAGTTCTTCATTGCTGATTTCTGAATCGGCGGTGTCACAGTTTTTGAC
TATCGATTTATGAATCGGCAGCAGCACAGTTTTGCTGCCGATTT
dot-bracket secondary structure
(((((((((((((.((.((.....(((((((((((.((((((((......(((((.....(((((((((((....))))))))))).......)))))..
..)))))))).)))))))))))...)).)).)))))))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11899-akr: 0.000000000002 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
