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ABOUT THIS RECORD
ID:
MNEST052033
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10211-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCACGTCCACTGTTCATGA
miRNA*
ATGAACACAGGACGTGAATT
mismatches:
3
bulges:
0
View larger
pre-miRNA
TGTTGC
ATGAACACAGGACGTGAATT
ATAATTCACGTCCTACTGTTCATGCATGAACAGTGGCGCGAATTATAA
TTCACGTCCACTGTTCATGA
CTTCA
dot-bracket secondary structure
.....(
(((((((..(((((((((((
(((((((.((.((.((((((((....)))))))))))).)))))))))
)))))))))..)))))))).
.....
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10556-akr
:
9e-17
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
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