ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10218-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCTATCTTCGCAGAATCC miRNA* AGCTTGTGGAGATGGTCATG mismatches: 4 bulges: 0 |
pre-miRNA
GTTATCGAGCTTGTGGAGATGGTCATGAAGGGTGCCGTTGTGCACATACTCGTAGACTAACACCCGCTCATTGCTATCTTCGCAGAATCCTAATAAC
dot-bracket secondary structure
(((((.((..(((((((((((((.((((.(((((..(((.(((........))))))...)))))..)))).)))))))))))))..))...)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GTTATCGAGCTTGTGGAGATGGTCATGAAGGGTGCCGTTGTGCACATACTCGTAGACTAACACCCGCTCATTGCTATCTTCGCAGAATCCTAATAAC
dot-bracket secondary structure
(((((.((..(((((((((((((.((((.(((((..(((.(((........))))))...)))))..)))).)))))))))))))..))...)))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|C0LGI2|Y1677_ARATH: 0.000004 RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
