ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10222-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGTGCGCTTTCTAGCCCTCAC miRNA* TGAGGGCTAGAAAGGGCACTCGA mismatches: 1 bulges: 1 |
pre-miRNA
TATTTGAATGATGAGGGCTAGAAAGGGCACTCGAAAGGAAAGAGATCTTTTTCCTTTTGAGTTTGCTTTCTAGCCTTCATCATTAAAATAATGTTTTTTC
AGGTCCTATCCCTTTCCTTTCGAGTGCGCTTTCTAGCCCTCACATATCAAATA
dot-bracket secondary structure
((((((((((.((((((((((((((.((((((((((((((((.(((......(((..((((...(((....))).)))).(((((...))))).......
)))....))).)))))))))))))))).))))))))))))))))).)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TATTTGAATGATGAGGGCTAGAAAGGGCACTCGAAAGGAAAGAGATCTTTTTCCTTTTGAGTTTGCTTTCTAGCCTTCATCATTAAAATAATGTTTTTTC
AGGTCCTATCCCTTTCCTTTCGAGTGCGCTTTCTAGCCCTCACATATCAAATA
dot-bracket secondary structure
((((((((((.((((((((((((((.((((((((((((((((.(((......(((..((((...(((....))).)))).(((((...))))).......
)))....))).)))))))))))))))).))))))))))))))))).)))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10633-akr: 3e-82 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10633-akr from PMRD (MNEST052455) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
