ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10223-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGCTCTCTATGCTTCTGTC miRNA* CAGAAGATAGAGAGCACAG mismatches: 0 bulges: 1 |
pre-miRNA
TGTTGACAGAAGATAGAGAGCACAGATGATGATATGCAATGGACTCTGCATCCCACTCCTTTGTGCTCTCTATGCTTCTGTCATCA
dot-bracket secondary structure
.(.(((((((((((((((((((((((.((((..(((((........)))))..)).)).)))))))))))))).))))))))).).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TGTTGACAGAAGATAGAGAGCACAGATGATGATATGCAATGGACTCTGCATCCCACTCCTTTGTGCTCTCTATGCTTCTGTCATCA
dot-bracket secondary structure
.(.(((((((((((((((((((((((.((((..(((((........)))))..)).)).)))))))))))))).))))))))).).
SIMILARITIES| miRBase ptc-MIR156j: 1e-43 PMRD ptc-miR156j: 1e-43 microPC miR157: 5e-27 | UniProt no hits RFAM no hits |
Identical with: ptc-miR156j from PMRD (MNEST051600) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
