ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10226-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCTTTGGGGAGATGGAGAGCTT miRNA* GCTTCCGATCTCCCTCAAAGGCTT mismatches: 4 bulges: 1 |
pre-miRNA
ATGGTTGGAGAAGCTTCCGATCTCCCTCAAAGGCTTCCTCTATAATTGCCTTACATGATGGCATTAGTGGACTCCTTTGGGGAGATGGAGAGCTTACTCC
CCAT
dot-bracket secondary structure
((((..(((((((((..(.(((((((.((((((..(((.(((....((((.........)))).))).)))..))))))))))))).)..))))).))))
))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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ATGGTTGGAGAAGCTTCCGATCTCCCTCAAAGGCTTCCTCTATAATTGCCTTACATGATGGCATTAGTGGACTCCTTTGGGGAGATGGAGAGCTTACTCC
CCAT
dot-bracket secondary structure
((((..(((((((((..(.(((((((.((((((..(((.(((....((((.........)))).))).)))..))))))))))))).)..))))).))))
))))
SIMILARITIES| miRBase csi-MIR477c: 0.00008 PMRD ptc-miRf11293-akr: 2e-54 microPC no hits | UniProt no hits RFAM MIR477: 2e-42 |
Identical with: ptc-miRf11293-akr from PMRD (MNEST053115) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
