ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10231-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAAAGTGTTTTCCGTTGACC miRNA* TTTCCCGGAAACCACTTTCCGG mismatches: 3 bulges: 1 |
pre-miRNA
GGAAAGTGGTTTCCCGGAAACCACTTTCCGGAAAACAAACACAGTCAAAAGGAAAAATATTTTCCTGGAAACCAAACCAAATTTTTCTTTGACTGAAAAG
TGTTTTTCGTTGACCGGAAAGTGTTTTCCGTTGACCAACTTTCC
dot-bracket secondary structure
(((((((((((...((((((.((((((((((..(((((((((((((((..((((((((........(....)........)))))))))))))).....)
)))))...)))..)))))))))).))))))..)))).)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GGAAAGTGGTTTCCCGGAAACCACTTTCCGGAAAACAAACACAGTCAAAAGGAAAAATATTTTCCTGGAAACCAAACCAAATTTTTCTTTGACTGAAAAG
TGTTTTTCGTTGACCGGAAAGTGTTTTCCGTTGACCAACTTTCC
dot-bracket secondary structure
(((((((((((...((((((.((((((((((..(((((((((((((((..((((((((........(....)........)))))))))))))).....)
)))))...)))..)))))))))).))))))..)))).)))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11300-akr: 4e-78 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10230-akr from PMRD (MNEST052052) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
